LECTURE N. 21 and 24 (extremely compressed, here and in the PACK find reference to materials that were mentioned)

simplicity/complexity/scales (Anderson1972)

micro/meso/macro scales: objects studied in diluted isolation (e.g. in vitro) and connected into a network of relationships (e.g. in vivo) , see Parisi's 2021  Nobel Lecture.

networks as a general model for complex systems.

structure meets networks at the nanoscale : Hi-C maps and the chromatin structure, see Kempfer_Pombo2019
                  

elements of network models:  nodes, links, adjacency matrices, degree distributions, power-laws (scale free-networks), communities [min-cut theorems] 


Communities (Fortunato2016)

suggested general textbook: Vito Latora, Vincenzo Nicosia and Giovanni Russo, Complex Networks, Cambridge University Press 2016

(see in particular chapters 2 and 9)

inner networks in proteins structures and sequences (see Vendruscolo2002, Sladek2021, Estrada 2010)

Recurrence Quantification Analysis as an inner correlation/information network in physiological signals and proteins

(https://en.wikipedia.org/wiki/Recurrence_quantification_analysis)

protein-protein networks, interactomes (see STRING database (https://string-db.org/))

interactomes as information networks (see cancelled CENTURI 2021 Cargese meeting: https://centuri-livingsystems.org/csm2021/)